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    <title>Enzo Cookbook and Tutorial</title>
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    <h1>Enzo Tutorial</h1>
    <ul>
      <li><a href="algorithms_top.html">Algorithms in Enzo</a>
	<ul>
	  <li>Adaptive Mesh Refinement
	  <li>Dark matter dynamics
	    <ul>
	      <li>Root grid:  Particle-Mesh (PM) Method
	      <li>Subgrids:  Multigrid Method
	    </ul>
	  <li>Hydrodynamics
	    <ul>
	      <li>Piecewise Parabolic Method
	      <li>Zeus Hydrodynamic Method
	    </ul>
	    
	  <li>Cooling/Heating
	    <ul>
	      <li>UV Background
	      <li>Radiative Cooling
		<ul>
		  <li>Simple cooling function
		  <li>Multispecies equilibrium
		</ul>
	    </ul>

	  <li>Star Formation/Feedback
	  <li>Parallelization Strategies in Enzo
	  <li>Initial Conditions Generator
	</ul>

      <li><a href="ics_top.html">Generating Initial Conditions</a>
	<ul>
	  <li>Single-grid dark matter-only run
	  <li>Single-grid dark matter + hydrodynamics run
	  <li>Dark matter + hydrodynamics, nested grid initial conditions
	</ul>

      <li><a href="paramfiles_top.html">Writing Parameter Files</a>
	<ul>
	  <li>Choose your cosmology
	  <li>Dark matter parameters
	  <li>Adiabatic hydrodynamics parameters
	  <li>Unigrid or AMR?
	    <ul>
	      <li>General grid parameters (Unigrid and AMR)
	      <li>Setting up multiple initial grids
	      <li>AMR over the entire grid volume
	      <li>AMR in a small region (with and without multiple initial grids)
	    </ul>
	  <li>Radiative Cooling and UV physics
	  <li>Star formation and feedback physics
	  <li>Parallelization options
	</ul>
    </ul>

    <h1>Enzo Cookbook</h1>

    <ul>
      <li><a href="step_top.html">Step-by-step startup instructions</a>
	<ul>
	  <li>Obtaining the Enzo package
	  <li>Compiling Enzo
	  <li>Running an Enzo test problem
	  <li>Running an Enzo cosmology simulation
	    <ul>
	      <li>Creating cosmological initial conditions with inits
	      <li>Parallel IO - the ring tool
	      <li>Running Enzo
	    </ul>
	</ul>

      <li><A href="machine_top.html">Running Enzo on specific machines</a> - scripts and notes
	<ul>
	  <li>SDSC Blue Horizon
	  <li>SDSC DataStar
	  <li>NCSA Copper
	  <li>NCSA Titan
	  <li>PSC Lemieux
	</ul>	    
      <li><A href="dataissues_top.html">Data Handling Issues/Backup Scripts</a>
      <li><A href="analysis_cook_top.html">Data analysis</a>
	<ul>
	  <li>HDF 5 tools
	  <li>Writing your own tools, I - the Enzo grid hierarchy
	  <li>Writing your own tools, II - Enzo physical units
	</ul>
      <li><A href="dataviz_top.html">Data visualization</a>
	<ul>
	  <li>LCA Vision
	  <li>Enzo Projection tools
	  <li>Jacques
	  <li>Others
	</ul>
      <li><a href="commonprob_top.html">Common Problems with Enzo</a>
	<ul>
	  <li>Compiling (including the Makefile system)
	  <li>Running Enzo
	  <li>Large simulations
	  <li>And more!
 	</ul>
    </ul>
    


<p>&nbsp;</p>
<p>&nbsp;</p>

<p>&nbsp;</p>
<p>
<a href="../index.html">Go to the Enzo home page</a>
</p>
<hr WIDTH="100%">
<center>&copy; 2004 &nbsp; <a href="http://cosmos.ucsd.edu">Laboratory for Computational Astrophysics</a><br></center>
<center>last modified February 2004<br>
by <a href="mailto:bwoshea (AT) lanl.gov">B.W. O'Shea</a></center>


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